Dataset retrieved from the Finngen database (version 7) including 3147 crohn´s cases (K50) and 296,100 controls. The dataset has been filtered on variants with P <1e-03. FinnGen data are publicly available and were downloaded from https://finngen.fi.
Format
A data frame with 32,303 rows and 8 variables:
- CHROM
Chromosome, written as for example chr1 or 1
- POS
genetic position of the variant
- REF
the reference allele
- ALT
the alternative allele
- P
P-value from Plink run, additive model, regression model GLM_FIRTH
- BETA
Variant effect
- ID
Variant identifier, e.g. rsid
- AF
Allele frequency