qqtopr() displays QQ plots for association data.
Required parameter is at least one dataset (dataframe) containing the association data (with columns CHROM,POS,P
Usage
qqtopr(
dat,
scale = 1,
n_variants = 0,
breaks = 15,
title = NULL,
color = get_topr_colors(),
size = 1,
legend_name = "",
legend_position = "right",
legend_labels = NULL,
axis_text_size = 11,
axis_title_size = 12,
title_text_size = 13,
legend_title_size = 12,
legend_text_size = 12,
verbose = NULL,
diagonal_line_color = "#808080"
)Arguments
- dat
Dataframe or a list of dataframes (required columns is
P)) of association results.- scale
An integer, plot elements scale, default: 1
- n_variants
An integer, total number of variants used in the study
- breaks
A number setting the breaks for the axes
- title
A string to set the plot title
- color
A string or vector of strings setting the color's for the input datasets
- size
A number or a vector of numbers, setting the size of the plot points (default:
size=1.2)- legend_name
A string, use to change the name of the legend (default: None)
- legend_position
A string, top,bottom,left or right
- legend_labels
A string or vector of strings representing legend labels for the input datasets
- axis_text_size
A number, size of the x and y axes tick labels (default: 12)
- axis_title_size
A number, size of the x and y title labels (default: 12)
- title_text_size
A number, size of the plot title (default: 13)
- legend_title_size
A number, size of the legend title
- legend_text_size
A number, size of the legend text
- verbose
A logical scalar (default: NULL). Set to FALSE to suppress printed messages
- diagonal_line_color
A string setting the color of the diagonal line on the plot